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Petter Ranefall | Publications | Projects | Downloads
LocalizeTip is a freely distributed tool for localizing the tip of a fish, implemented as a plugin to CellProfiler.
The plugin is distributed together with a CellProfiler pipeline where it is used to measure the tail intensity.
This software was developed at the Centre for Image Analysis, Uppsala University.
A description of LocalizeTip can be found in this publication:
Anna Smirnova, Anna Mentor, Petter Ranefall, Carl-Gustaf Bornehag, Björn Brunström, Anna Mattsson, Maria Jönsson
A human-relevant chemical mixture that was negatively associated with birth weight increased apoptosis, reduced Wnt/ß-catenin signaling, and altered tail development in zebrafish embryos
International Symposium on Biomedical Imaging (ISBI'16), Prague, Czech Republic, April 13-16, 2016
If you use this software for research purposes, please cite the aforementioned paper(s) in any resulting publication.
LocalizeTip (CellProfiler, requires CellProfiler 3.0 or later)