Scalable computational modeling of living cells

Erik Blom
Division of Scientific Computing, IT Department, Uppsala University


Abstract:

Understanding the development of biological tissue from the fundamental interactions between its constituent cells can provide insight into tumor growth, wound healing, embryonic development, etc. However, a great challenge in computational modeling of complex biological systems is how to meaningfully compare simulation results with available data.

In this talk, I give an overview of my PhD research project which aims to contribute to this quest towards data-driven accurate models and simulations of biological cell populations, by developing such models from first principle. Currently, we are working on an existing agent-based model of avascular tumors in which we study the mechanisms pertaining to finite-sized growth, in comparison with the growth patterns observed for biological tumors.