cnF2freq

The source for the cnF2freq tool for determining line origin genotype probabilities in outbred intercrosses (and more) is available here (release 0.2). Copyright notice and permissive license found in source.

Please note that this is a work in progress. The source has been updated and refactored since the last public release. If you are interested in analyzing a particular dataset, you are very welcome to contact the author for some pointers or practical help in writing a parser to the specific internal representation used, or to get access to improved haplotype inference and map distance re-estimation.


Carl Nettelblad